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PCsRNAdb: a comprehensive resource of small noncoding RNAs across cancers

Small noncoding RNAs (sncRNAs) constitute a diverse class of endogenous transcripts, including miRNAs, piRNAs, tRNA-derived fragments (tDRs), rRNA-derived fragments (rRFs), and …

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Ren-De HUANG

CRCFound: A Colorectal Cancer CT Image Foundation Model Based on Self-Supervised Learning

Accurate risk stratification is crucial for determining the optimal treatment plan for patients with colorectal cancer (CRC). However, existing deep learning models perform poorly …

Jing Yang

Personalized risk stratification in colorectal cancer via PIANOS system

**Background**: Colorectal cancer (CRC) is the third-most common malignancy and the second-leading cause of cancer-related death worldwide. Despite considerable progress in …

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Du CAI

Interpretable Multimodal Fusion Model for Bridged Histology and Genomics Survival Prediction in Pan-Cancer

Understanding the prognosis of cancer patients is crucial for enabling precise diagnosis and treatment by clinical practitioners. Multimodal fusion models based on artificial …

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Feng GAO

Challenges in AI-driven Biomedical Multimodal Data Fusion and Analysis

The rapid development of biological and medical examination methods has vastly expanded personal biomedical information, including molecular, cellular, image, and electronic health …

Junwei Liu

SegMamba-V2: Long-range Sequential Modeling Mamba For General 3D Medical Image Segmentation

The Transformer architecture has demonstrated remarkable results in 3D medical image segmentation due to its capability of modeling global relationships. However, it poses a …

Zhaohu Xing

Deciphering Tertiary Lymphoid Structure Heterogeneity Reveals Prognostic Signature and Therapeutic Potentials for Colorectal Cancer: A Multicenter Retrospective Cohort Study

**Background**: Tertiary lymphoid structures (TLSs) exert a crucial role in the tumor microenvironment (TME), impacting tumor development, immune escape, and drug resistance. …

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Jia-Xin LEI

TMO-Net: an explainable pretrained multi-omics model for multi-task learning in oncology

Molecular subtyping of cancer is a critical step towards more individualized therapy and provides important biological insights into cancer heterogeneity. Although gene expression …

Feng-Ao Wang

Senescence-based colorectal cancer subtyping reveals distinct molecular characteristics and therapeutic strategies

Cellular senescence has been listed as a hallmark of cancer, but its role in colorectal cancer (CRC) remains unclear. We comprehensively evaluated the transcriptome, genome, …

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Min-Yi LV

Segmentation only uses sparse annotations: Unified weakly and semi-supervised learning in medical images

Since segmentation labeling is usually time-consuming and annotating medical images requires professional expertise, it is laborious to obtain a large-scale, high-quality annotated …

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Feng GAO