Publications

Zhengran Zhou, Richard Mortensen, Peishan Hu, Bo Jin, Xiao-Bin Zheng, Xiao Li, James Schilling, C. James Chou, Karl G. Sylvester, Yanghai Cong, Xiaojian Wu, Feng GAO, Xuefeng B. Ling, Xuanhui Liu (2025). A plasma metabolite-based test to detect minimal residual disease in post-surgery patients with colorectal cancer. iScience.

DOI

Ren-De HUANG, Jiang Li, Qi Cao, Lixia Wang, Zhixiong Shao, Haochun Yang, Xinlei Zhang, Chuanlai Yang, Xiangya Kong, Qiuyue Gu, Jianmin Wu, Tsan- Yu Chiu, Penghu Lian, Kui Wu, Feng GAO, Zhongxu Zhu (2025). PCsRNAdb: a comprehensive resource of small noncoding RNAs across cancers. NAR.

Code Project DOI

Yibin Zhao, Hao Liu, Yu Wang, Jie Shen, Yang Le, Peiyuan Li, Yuxiang Zhao, Feng GAO, Wei Cui (2025). Immunological Microenvironment Differences Between Left and Right Colon Cancer: Dynamic Interactions of CASC15+KLK6+ Epithelial Subpopulation with T Cells and Mast Cells. IJS.

DOI

Chong-Xiang GAO, Du CAI, Jianguang Qiu, Feng GAO (2025). The role of tertiary lymphoid structures in renal cell carcinoma: From predictive biomarker to therapeutic target. Clin Transl Disc.

DOI

Jing Yang, Du CAI, Junwei Liu, Zhenfeng Zhuang, Yibin Zhao, Feng-Ao Wang, Cheng-Hang LI, Chu-Ling HU, Bao-Wen GAI, Yiping Chen, Yixue Li, Liansheng Wang, Feng GAO, Xiaojian Wu (2025). CRCFound: A Colorectal Cancer CT Image Foundation Model Based on Self-Supervised Learning. Advanced Science.

DOI

Du CAI, Hao-Ning QI, Qiuxia Yang, Huayu Li, Cheng-Hang LI, Chu-Ling HU, Bao-Wen GAI, Xu Zhang, Yize Mao, Feng GAO, Xiaojian Wu (2025). Personalized risk stratification in colorectal cancer via PIANOS system. Nature Communications.

DOI

Jia Ke, Ying Li, Lin Qi, Xiang Li, Wei Wang, Sanne Ten Hoorn, Yin Zhu, Hao Huang, Feng GAO, Louis Vermeulen, Xin Wang (2025). Poor-prognosis young-onset colorectal cancer is defined by the mesenchymal subtype and can be predicted by integrating molecular and histopathological characteristics. ESMO Gastrointest Oncol.

DOI

Feng GAO, Junxiang Ding, Bao-Wen GAI, Du CAI, Chu-Ling HU, Feng-Ao Wang, Ruikun He, Junwei Liu, Yixue Li, Xiao-Jian Wu (2025). Interpretable Multimodal Fusion Model for Bridged Histology and Genomics Survival Prediction in Pan-Cancer. Advanced Science.

DOI

Xuefeng Zhang, Bin Yan, Zhaohu Xing, Feng GAO, Yuandong Tao, Zhenyan Han, Weiming Wang, Lei Zhu (2025). HADiff: hierarchy aggregated diffusion model for pathology image segmentation. TVC.

Code DOI

Junwei Liu, Xiaoping Cen, Chenxin Yi, Feng-Ao Wang, Junxiang Ding, Jinyu Cheng, Qinhua Wu, Bao-Wen GAI, Yiwen Zhou, Ruikun He, Feng GAO, Yixue Li (2025). Challenges in AI-driven Biomedical Multimodal Data Fusion and Analysis. Genomics Proteomics Bioinformatics.

DOI PMID

Jinsei Miyoshi, Alessandro Mannucci, Marco Scarpa, Feng GAO, Shusuke Toden, Timothy Whitsett, Landon J Inge, Ross M Bremner, Tetsuji Takayama, Yulan Cheng, Teodoro Bottiglieri, Iris D Nagetaal, Martha J Shrubsole, Ali H Zaidi, Xin Wang, Helen G Coleman, Lesley a Anderson, Stephen J Meltzer, Ajay Goel (2025). Liquid biopsy to identify Barrett's oesophagus, dysplasia and oesophageal adenocarcinoma: the EMERALD multicentre study. Gut.

Dataset DOI PMID Trial Registration

Zhaohu Xing, Tian Ye, Yijun Yang, Du CAI, Bao-Wen GAI, Xiao-Jian Wu, Feng GAO, Lei Zhu (2025). SegMamba-V2: Long-range Sequential Modeling Mamba For General 3D Medical Image Segmentation. TMI.

Code DOI

Xinzhe Zhao, Hongda Zhang, Hengyu Zhao, Decan Kong, Weijie Zeng, Feng GAO, Xiaochun Meng, Jia Ke (2024). Anatomic association between the gastrocolic trunk of Henle and right colic artery by high-quality CT venography. Scientific Reports.

DOI

Zhen Xie, Du CAI, Runyi Ye, Zhen Shan, Ying Lin, Feng GAO, Nan Shao, Xiaying Kuang (2024). Integrated immune-related gene signature predicts clinical outcome for patients with Luminal B breast cancer. Gland Surgery.

DOI PMID

Feng Guo, Xianglin Ji, Chuxiao Xiong, Hailiang Sun, Zhenghua Liang, Richard Yan-Do, Bao-Wen GAI, Feng GAO, Linfeng Huang, Zhongping Li, Becki Yi Kuang, Peng Shi (2024). Single-cell encoded gene silencing for high-throughput combinatorial siRNA screening. Nature Communications.

DOI PMID

Jia-Xin LEI, Run-Xian WANG, Chu-Ling HU, Xiaoying Lou, Min-Yi LV, Cheng-Hang LI, Bao-Wen GAI, Xiao-Jian Wu, Ruoxu Dou, Du CAI, Feng GAO (2024). Deciphering Tertiary Lymphoid Structure Heterogeneity Reveals Prognostic Signature and Therapeutic Potentials for Colorectal Cancer: A Multicenter Retrospective Cohort Study. International Journal of Surgery.

DOI PMID

Shu-Ting YANG, Shuoming Luo, Zhiguang Zhou (2024). A new vision of diabetes classification： A shift from clinical manifestation to etiological molecular mechanism. Journal of Practical Medicine / Shiyong Yixue Zazhi.

DOI

Feng-Ao Wang, Zhenfeng Zhuang, Feng GAO, Ruikun He, Shaoting Zhang, Liansheng Wang, Junwei Liu, Yixue Li (2024). TMO-Net: an explainable pretrained multi-omics model for multi-task learning in oncology. Genome Biology.

DOI PMID

Wei Lou, Xiang Wan, Guanbin Li, Xiaoying Lou, Cheng-Hang LI, Feng GAO, Haofeng Li (2024). Structure Embedded Nucleus Classification for Histopathology Images. IEEE Transactions on Medical Imaging.

DOI PMID

Nan Zhang, Wei Wang, Xin Gao, Feng GAO (2024). Editorial: Clinical risk assessment and intervention of gastrointestinal tumors driven by big-data. Frontiers in Medicine.

DOI

Ngan Pan Bennett Au, Tan Wu, Xinyu Chen, Feng GAO, Yuen Tung Yolanda Li, Wing Yip Tam, Kwan Ngok Yu, Daniel H Geschwind, Giovanni Coppola, Xin Wang, Chi Him Eddie Ma (2023). Genome-wide study reveals novel roles for formin-2 in axon regeneration as a microtubule dynamics regulator and therapeutic target for nerve repair. Neuron.

DOI PMID

Jia Ke, Cheng Jin, Jinghua Tang, Haimei Cao, Songbing He, Peirong Ding, Xiaofeng Jiang, Hengyu Zhao, Wuteng Cao, Xiaochun Meng, Feng GAO, Ping Lan, Ruijiang Li, Xiaojian Wu (2023). A Longitudinal MRI-Based Artificial Intelligence System to Predict Pathological Complete Response After Neoadjuvant Therapy in Rectal Cancer: A Multicenter Validation Study. Diseases of the Colon & Rectum.

DOI PMID

Yanjiao Hua, Du CAI, Cole Andrea Shirley, Sien Mo, Ruyun Chen, Feng GAO, Fangying Chen (2023). A prognostic model for ovarian neoplasms established by an integrated analysis of 1580 transcriptomic profiles. Scientific Reports.

DOI

Lin Qi, Jie-Ying Liang, Zhong-Wu Li, Shao-Yan Xi, Yu-Ni Lai, Feng GAO, Xian-Rui Zhang, De-Shen Wang, Ming-Tao Hu, Yi Cao, Li-Jian Xu, Ronald C K Chan, Bao-Cai Xing, Xin Wang, Yu-Hong Li (2023). Deep learning-derived spatial organization features on histology images predicts prognosis in colorectal liver metastasis patients after hepatectomy. iScience.

DOI

Shu-Ting YANG, Chao Deng, Bobo He, Xi Chen, Xia Li, Zhiguang Zhou (2023). Application of the Chinese Expert Consensus on Diabetes Classification in Clinical Practice. Zhonghua Nei Ke Za Zhi (Chinese Journal of Internal Medicine).

DOI PMID

Yize Mao, Hui Xie, Min-Yi LV, Qiuxia Yang, Zeyu Shuang, Feng GAO, Shengping Li, Lina Zhu, Wei Wang (2023). The landscape of objective response rate of anti-PD-1/L1 monotherapy across 31 types of cancer: a system review and novel biomarker investigating. Cancer Immunology, Immunotherapy.

DOI

Min-Yi LV, Du CAI, Cheng-Hang LI, Junguo Chen, Guanman Li, Chu-Ling HU, Bao-Wen GAI, Jiaxin Lei, Ping Lan, Xiaojian Wu, Xiaosheng He, Feng GAO (2023). Senescence-based colorectal cancer subtyping reveals distinct molecular characteristics and therapeutic strategies. MedComm.

DOI PMID

Yuanyuan Guo, Xuantong Zhou, Feng GAO, Minjie Wang, Qi Yang, Xin Li, Zhihua Liu, Aiping Luo (2023). MiR-423-5p is a novel endogenous control for the quantification of circulating miRNAs in human esophageal squamous cell carcinoma. Heliyon.

DOI

Du CAI, Wei Wang, Min-Er ZHONG, Dejun Fan, Xuanhui Liu, Cheng-Hang LI, Ze-Ping HUANG, Qi-Qi ZHU, Min-Yi LV, Chu-Ling HU, Xin DUAN, Xiao-Jian Wu, Feng GAO (2023). An immune, stroma, and epithelial--mesenchymal transition-related signature for predicting recurrence and chemotherapy benefit in stage II--III colorectal cancer. Cancer Medicine.

DOI

Feng GAO, William C. Cho, Xin Gao, Wei Wang (2023). Editorial: Medical knowledge-assisted machine learning technologies in individualized medicine. Frontiers in Molecular Biosciences.

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Yicheng Li, Shu-Ting YANG, Minjun Liao, Zijun Zheng, Mengyao Li, Xuerong Wei, Mengqian Liu, Lei Yang (2023). Association between genetically predicted leukocyte telomere length and non-scarring alopecia: a two-sample Mendelian randomization study. Frontiers in Immunology.

DOI

Feng GAO, William C Cho, Xin Gao, Wei Wang (2023). Medical knowledge-assisted machine learning technologies in individualized medicine. Frontiers in Molecular Biosciences.

DOI

Min-Er ZHONG, Xin DUAN, Ma-Yi-Di-Li Ni-Jia-Ti, Hao-Ning QI, Dong-Wei XU, Du CAI, Cheng-Hang LI, Zeping Huang, Qi-Qi ZHU, Feng GAO, Xiaojian Wu (2022). CT-based radiogenomic analysis dissects intratumor heterogeneity and predicts prognosis of colorectal cancer: a multi-institutional retrospective study. Journal of Translational Medicine.

DOI PMID

Chu-Ling HU, Du CAI, Min-Er ZHONG, Dejun Fan, Cheng-Hang LI, Min-Yi LV, Ze-Ping HUANG, Wei Wang, Xiao-Jian Wu, Feng GAO (2022). Predicting prognosis and immunotherapy response among colorectal cancer patients based on a tumor immune microenvironment-related lncRNA signature. Frontiers in Genetics.

DOI

Feng GAO, Minhao Hu, Min-Er ZHONG, Shixiang Feng, Xuwei Tian, Xiaochun Meng, Ze-Ping HUANG, Min-Yi LV, Tao Song, Xiaofan Zhang, Xiangguang Zou, Xiaojian Wu (2022). Segmentation only uses sparse annotations: Unified weakly and semi-supervised learning in medical images. Medical Image Analysis.

DOI PMID

Min-Er ZHONG, Ze-Ping HUANG, Xun WANG, Du CAI, Cheng-Hang LI, Feng GAO, Xiao-Jian Wu, Wei Wang (2022). A transcription factor signature can identify the CMS4 subtype and stratify the prognostic risk of colorectal cancer. Frontiers in Oncology.

DOI

Cheng-Hang LI, Du CAI, Min-Er ZHONG, Min-Yi LV, Ze-Ping HUANG, Qi-Qi ZHU, Chu-Ling HU, Hao-Ning QI, Xiaojian Wu, Feng GAO (2022). Multi-size deep learning based preoperative computed tomography signature for prognosis prediction of colorectal cancer. Frontiers in Genetics.

DOI

Qian Cai, Yi-Ze Mao, Si-Qi Dai, Feng GAO, Qian Xiao, Wan-Ming Hu, Tao Qin, Qiu-Xia Yang, Zhao-Zhou Li, Du CAI, Min-Er ZHONG, Ke-Feng Ding, Xiaojian Wu, Rong Zhang (2022). The growth pattern of liver metastases on MRI predicts early recurrence in patients with colorectal cancer: a multicenter study. European Radiology.

DOI PMID

Min-Yi LV, Wei Wang, Min-Er ZHONG, Du CAI, De-Jun FAN, Cheng-Hang LI, Wei-Bin KOU, Ze-Ping HUANG, Xin DUAN, Chu-Ling HU, Qi-Qi ZHU, Xiao-Sheng He, Feng GAO (2022). DNA Repair–Related Gene Signature in Predicting Prognosis of Colorectal Cancer Patients. Frontiers in Genetics.

DOI PMID

Jinsei Miyoshi, Zhongxu Zhu, Aiping Luo, Shusuke Toden, Xuantong Zhou, Daisuke Izumi, Mitsuro Kanda, Tetsuji Takayama, Iqbal M. Parker, Minjie Wang, Feng GAO, Ali H. Zaidi, Hideo Baba, Yasuhiro Kodera, Yongping Cui, Xin Wang, Zhihua Liu, Ajay Goel (2022). A microRNA-based liquid biopsy signature for the early detection of esophageal squamous cell carcinoma: a retrospective, prospective and multicenter study. Molecular Cancer.

DOI PMID

Tongtong Kan, Shupeng Zhang, Shengtao Zhou, Ya Zhang, Yun Zhao, Yinghua Gao, Tao Zhang, Feng GAO, Xin Wang, Linjie Zhao, Mengsu Yang (2022). Single-cell RNA-seq recognized the initiator of epithelial ovarian cancer recurrence. Oncogene.

DOI

Xin DUAN, Wei Wang, Minghui Tang, Feng GAO, Xu-Dong Lin (2022). Dissecting Cellular Heterogeneity Based on Network Denoising of scRNA-seq Using Local Scaling Self-Diffusion. Frontiers in Genetics.

DOI PMID

Xu-Tao Lin, Qiu-Ning Wu, Si Qin, De-Jun FAN, Min-Yi LV, Xi Chen, Jia-Wei Cai, Jing-Rong Weng, Yi-Feng Zou, Yu-Ming Rong, Feng GAO (2021). Identification of an autophagy-related gene signature for the prediction of prognosis in early-stage colorectal cancer. Frontiers in Genetics.

DOI

Yu-Feng Chen, Zhao-Liang Yu, Min-Yi LV, Ze-Rong Cai, Yi-Feng Zou, Ping Lan, Xiao-Jian Wu, Feng GAO (2021). Cancer-associated fibroblasts impact the clinical outcome and treatment response in colorectal cancer via immune system modulation: a comprehensive genome-wide analysis. Molecular Medicine.

DOI PMID

Raju Kandimalla, Wei Wang, Fan Yu, Nianxin Zhou, Feng GAO, Monique Spillman, Lucie Moukova, Ondrej Slaby, Bodour Salhia, Shengtao Zhou, Xin Wang, Ajay Goel (2021). OCaMIR—a noninvasive, diagnostic signature for early-stage ovarian cancer: a multi-cohort retrospective and prospective study. Clinical Cancer Research.

DOI

Haoyang Li, Juexiao Zhou, Yi Zhou, Qiang Chen, Yangyang She, Feng GAO, Ying Xu, Jieyu Chen, Xin Gao (2021). An interpretable computer-aided diagnosis method for periodontitis from panoramic radiographs. Frontiers in Physiology.

DOI PMID

Yu-Feng Chen, Zhao-Liang Yu, Min-Yi LV, Bin Zheng, Ying-Xin Tan, Jia Ke, Xuan-Hui Liu, Ze-Rong Cai, Yi-Feng Zou, Ping Lan, Xiao-Jian Wu, Feng GAO (2021). Genome-Wide analysis reveals hypoxic microenvironment is associated with immunosuppression in poor survival of stage II/III colorectal cancer patients. Frontiers in Medicine.

DOI PMID

Cheng Jin, Heng Yu, Jia Ke, Peirong Ding, Yongju Yi, Xiaofeng Jiang, Xin DUAN, Jinghua Tang, Daniel T. Chang, Xiaojian Wu, Feng GAO, Ruijiang Li (2021). Predicting treatment response from longitudinal images using multi-task deep learning. Nature Communications.

DOI PMID

Xianrui Wu, Yunfeng Zhang, Tuo Hu, Xiaowen He, Yifeng Zou, Qiling Deng, Jia Ke, Lei Lian, Xiaosheng He, Dezhi Zhao, Xuyu Cai, Zhiwei Chen, Xiaojian Wu, Jian-Bing Fan, Feng GAO, Ping Lan (2021). A novel cell-free DNA methylation-based model improves the early detection of colorectal cancer. Molecular Oncology.

DOI PMID

Lin Qi, Jia Ke, Zhaoliang Yu, Yi Cao, Yuni Lai, Yufeng Chen, Feng GAO, Xin Wang (2021). Identification of prognostic spatial organization features in colorectal cancer microenvironment using deep learning on histopathology images. Medicine in Omics.

DOI

Xia Li, Shu-Ting YANG, Xilin Yang, Zhiguang Zhou (2021). Response to Letter to the Editor from Knobler et al:“Validation of the Swedish Diabetes Regrouping Scheme in Adult-Onset Diabetes in China”. The Journal of Clinical Endocrinology & Metabolism.

DOI

Zhao-Liang Yu, Yu-Feng Chen, Bin Zheng, Ze-Rong Cai, Yi-Feng Zou, Jia Ke, Ping Lan, Feng GAO, Xiao-Jian Wu (2021). Protein-protein interaction analysis reveals a novel cancer stem cell related target TMEM17 in colorectal cancer. Cancer Cell International.

DOI PMID

Du CAI, Xin DUAN, Wei Wang, Ze-Ping HUANG, Qi-Qi ZHU, Min-Er ZHONG, Min-Yi LV, Cheng-Hang LI, Wei-Bin KOU, Xiao-Jian Wu, Feng GAO (2021). A metabolism-related radiomics signature for predicting the prognosis of colorectal cancer. Frontiers in Molecular Biosciences.

DOI

Xia Li, Shu-Ting YANG, Chuqing Cao, Xiang Yan, Lei Zheng, Lanbo Zheng, Jiarui Da, Xiaohan Tang, Linong Ji, Xilin Yang, Zhiguang Zhou (2020). Validation of the Swedish diabetes re-grouping scheme in adult-onset diabetes in China. The Journal of Clinical Endocrinology & Metabolism.

DOI PMID

Jia Ke, Xuan-Hui Liu, Xiao-Feng Jiang, Zhen He, Jian Xiao, Bin Zheng, Yu-Feng Chen, Ze-Rong Cai, Xiao-Bin Zheng, Yi-Feng Zou, Ping Lan, Xiao-Jian Wu, Feng GAO (2020). Immune-related gene signature in predicting prognosis of early-stage colorectal cancer patients. European Journal of Surgical Oncology.

DOI PMID

Xin DUAN, Kejun Wang, Jia Ke, Ping Lan, Feng GAO, Xiaojian Wu (2020). Multiomics-based colorectal cancer molecular subtyping using local scaling network fusion. Journal of Computational Biology.

DOI

Xiang Sun, Zhijun Ren, Yixian Cun, Cai Zhao, Xianglin Huang, Jiajian Zhou, Rong Hu, Xiaoxi Su, Lu Ji, Peng Li, King Lun Kingston Mak, Feng GAO, Yi Yang, He Xu, Junjun Ding, Nan Cao, Shuo Li, Wensheng Zhang, Ping Lan, Hao Sun, Jinkai Wang, Ping Yuan (2020). Hippo-YAP signaling controls lineage differentiation of mouse embryonic stem cells through modulating the formation of super-enhancers. Nucleic Acids Research.

DOI PMID

Asif Rashid, Xin DUAN, Feng GAO, Mengsu Yang, Andrew Yen (2020). Roscovitine enhances All-trans retinoic acid (ATRA)-induced leukemia cell differentiation: Novel effects on signaling molecules for a putative Cdk2 inhibitor. Cellular Signalling.

DOI PMID

Chuqing Cao, Shu-Ting YANG, Zhiguang Zhou (2020). GLP-1 receptor agonists and pancreatic safety concerns in type 2 diabetic patients: data from cardiovascular outcome trials. Endocrine.

DOI PMID

Asif Rashid, Xin DUAN, Feng GAO, Mengsu Yang, Andrew Yen (2020). Roscovitine enhances all-trans retinoic acid (ATRA)-induced nuclear enrichment of an ensemble of activated signaling molecules and augments ATRA-induced myeloid cell differentiation. Oncotarget.

DOI

Shu-Ting YANG, Chuqing Cao, Zhiguo Xie, Zhiguang Zhou (2020). Analysis of potential hub genes involved in the pathogenesis of Chinese type 1 diabetic patients. Annals of Translational Medicine.

DOI PMID

Chuqing Cao, Shu-Ting YANG, Zhiguang Zhou (2020). The potential application of Cordyceps in metabolic-related disorders. Phytotherapy Research.

DOI

Shu-Biao Ye, Yi-Kan Cheng, Jian-Cong Hu, Feng GAO, Ping Lan (2020). Development and validation of an individualized gene expression-based signature to predict overall survival in metastatic colorectal cancer. Annals of Translational Medicine.

DOI PMID

Yangyang She, Xiangbo Kong, Yaping Ge, Ping Yin, Zhiyong Liu, Jieyu Chen, Feng GAO, Silian Fang (2020). Immune-related gene signature for predicting the prognosis of head and neck squamous cell carcinoma. Cancer Cell International.

DOI PMID

Shu-Ting YANG, Chuqing Cao, Tuo Deng, Zhiguang Zhou (2020). Obesity-related glomerulopathy: a latent change in obesity requiring more attention. Kidney and Blood Pressure Research.

DOI

Xin DUAN, Kejun Wang, Jia Ke, Ping Lan, Feng GAO, Xiaojian Wu (2019). Multiomics-Based Colorectal Cancer Molecular Subtyping Using Local Scaling Network Fusion. Journal of Computational Biology.

DOI PMID

Chuqing Cao, Shu-Ting YANG, Zhiguang Zhou (2019). GLP-1 receptor agonists and risk of cancer in type 2 diabetes: an updated meta-analysis of randomized controlled trials. Endocrine.

DOI PMID

Yi-Feng Zou, Yu-Ming Rong, Ying-Xin Tan, Jian Xiao, Zhao-Liang Yu, Yu-Feng Chen, Jia Ke, Cheng-Hang LI, Xi Chen, Xiao-Jian Wu, Ping Lan, Xu-Tao Lin, Feng GAO (2019). A signature of hypoxia-related factors reveals functional dysregulation and robustly predicts clinical outcomes in stage I/II colorectal cancer patients. Cancer Cell International.

DOI PMID

Hui Chen, Feng GAO, Mian He, Xiao Fan Ding, Aikha M. Wong, Siu Ching Sze, Allen C. Yu, Tingting Sun, Anthony W.-H. Chan, Xin Wang, Nathalie Wong (2019). Long-Read RNA Sequencing Identifies Alternative Splice Variants in Hepatocellular Carcinoma and Tumor-Specific Isoforms. Hepatology.

DOI PMID

Liuyan Zhang, Ping Zhu, Yao Tong, Yuzhuo Wang, Haifen Ma, Xuefei Xia, Yu Zhou, Xingguo Zhang, Feng GAO, Peng Shu (2019). An immune-related gene pairs signature predicts overall survival in serous ovarian carcinoma. OncoTargets and Therapy.

DOI PMID

Feng GAO, Wei Wang, Miaomiao Tan, Lina Zhu, Yuchen Zhang, Evelyn Fessler, Louis Vermeulen, Xin Wang (2019). DeepCC: a novel deep learning-based framework for cancer molecular subtype classification. Oncogenesis.

DOI PMID

Bitao Jiang, Qingsen Sun, Yao Tong, Yuzhuo Wang, Haifen Ma, Xuefei Xia, Yu Zhou, Xingguo Zhang, Feng GAO, Peng Shu (2019). An immune-related gene signature predicts prognosis of gastric cancer. Medicine.

DOI PMID

Michael P. Menden, Dennis Wang, Mike J. Mason, Bence Szalai, Krishna C. Bulusu, Yuanfang Guan, Thomas Yu, Jaewoo Kang, Minji Jeon, Russ Wolfinger, Tin Nguyen, Mikhail Zaslavskiy, AstraZeneca-Sanger Drug Combination DREAM Consortium Including Feng GAO, In Sock Jang, Zara Ghazoui, Mehmet Eren Ahsen, Robert Vogel, Elias Chaibub Neto, Thea Norman, Eric K. Y. Tang, Mathew J. Garnett, Giovanni Y. Di Veroli, Stephen Fawell, Gustavo Stolovitzky, Justin Guinney, Jonathan R. Dry, Julio Saez-Rodriguez (2019). Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen. Nature Communications.

DOI PMID

Raju Kandimalla, Tsuyoshi Ozawa, Feng GAO, Xin Wang, Ajay Goel, T1 Colorectal Cancer Study Group (2019). Gene expression signature in surgical tissues and endoscopic biopsies identifies high-risk T1 colorectal cancers. Gastroenterology.

DOI

Raju Kandimalla, Feng GAO, Ying Li, Hao Huang, Jia Ke, Xin Deng, Linjie Zhao, Shengtao Zhou, Ajay Goel, Xin Wang (2019). RNAMethyPro: a biologically conserved signature of N6-methyladenosine regulators for predicting survival at pan-cancer level. npj Precision Oncology.

DOI PMID

Fuminori Sonohara, Feng GAO, Naoki Iwata, Mitsuro Kanda, Masahiko Koike, Naoki Takahashi, Yasuhide Yamada, Yasuhiro Kodera, Xin Wang, Ajay Goel (2019). Genome-wide discovery of a novel gene-expression signature for the identification of lymph node metastasis in esophageal squamous cell carcinoma. Annals of Surgery.

DOI

Wei Wang, Raju Kandimalla, Hao Huang, Lina Zhu, Ying Li, Feng GAO, Ajay Goel, Xin Wang (2019). Molecular subtyping of colorectal cancer: Recent progress, new challenges and emerging opportunities. Seminars in Cancer Biology.

DOI

Daisuke Izumi, Feng GAO, Shusuke Toden, Fuminori Sonohara, Mitsuro Kanda, Takatsugu Ishimoto, Yasuhiro Kodera, Xin Wang, Hideo Baba, Ajay Goel (2019). A genomewide transcriptomic approach identifies a novel gene expression signature for the detection of lymph node metastasis in patients with early stage gastric cancer. EBioMedicine.

DOI PMID

Rodica P. Bunaciu, Robert J. MacDonald, Holly A. Jensen, Feng GAO, Xin Wang, Lynn Johnson, Jeffrey D. Varner, Andrew Yen (2018). Retinoic acid and 6-formylindolo(3,2-b)carbazole (FICZ) combination therapy reveals putative targets for enhancing response in non-APL AML. Leukemia and Lymphoma.

DOI PMID

Zhen Xu, Peilin Fang, Bingzhe Xu, Yufeng Lu, Jinghui Xiong, Feng GAO, Xin Wang, Jun Fan, Peng Shi (2018). High-throughput three-dimensional chemotactic assays reveal steepness-dependent complexity in neuronal sensation to molecular gradients. Nature Communications.

DOI PMID

Kejun Wang, Xin DUAN, Feng GAO, Wei Wang, Liangliang Liu, Xin Wang (2018). Dissecting cancer heterogeneity based on dimension reduction of transcriptomic profiles using extreme learning machines. PLoS ONE.

DOI PMID

Raju Kandimalla, Feng GAO, Takatoshi Matsuyama, Toshiaki Ishikawa, Hiroyuki Uetake, Naoki Takahashi, Yasuhide Yamada, Carlos Becerra, Scott Kopetz, Xin Wang, Ajay Goel (2018). Genome-wide discovery and identification of a novel miRNA signature for recurrence prediction in stage II and III colorectal cancer. Clinical Cancer Research.

DOI

Tsuyoshi Ozawa, Raju Kandimalla, Feng GAO, Hiroaki Nozawa, Keisuke Hata, Hiroshi Nagata, Satoshi Okada, Daisuke Izumi, Hideo Baba, James Fleshman, Xin Wang, Toshiaki Watanabe, Ajay Goel (2018). A microRNA signature associated with metastasis of T1 colorectal cancers to lymph nodes. Gastroenterology.

DOI

Rodica P Bunaciu, Robert J MacDonald, Feng GAO, Lynn M Johnson, Jeffrey D Varner, Xin Wang, Sarah Nataraj, Monica L Guzman, Andrew Yen (2018). Potential for subsets of wt-NPM1 primary AML blasts to respond to retinoic acid treatment. Oncotarget.

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